If you haven't already, download Eyeball from the Eyeball package page and unzip it into a directory of your choice. The download is rather large, because Eyeball 2.1 includes the Jena jars so that it runs stand-alone.
If you have Ant installed, run the Eyeball test suite:
ant test
If it doesn't say that the tests passed, let us know; there's a problem.
Ensure all the jars in the Eyeball lib directory are on your classpath. (You might find this list helpful.)
Pick one of your RDF files; we'll call it FOO for now. Run the command-line command:
java jena.eyeball -check FOO
You will likely get a whole bunch of messages about your RDF. The messages are supposed to be self-explanatory, so you may be able to go ahead and fix some problems straight away. If you get a Java error about NoClassDefFoundError, you've forgotten to set the classpath up or use the -cp myClassPath option to Java.
(You may also want to try the experimental Eyeball GUI, but you'll still need to start it from the command line.)
If the messages aren't self-explanatory, or you want more details, you'll want to move on to the brief guide.