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Google_Service_Genomics:: (1 method):
__construct()
Google_Service_Genomics_Beacons_Resource:: (1 method):
get()
Google_Service_Genomics_Callsets_Resource:: (6 methods):
create()
delete()
get()
patch()
search()
update()
Google_Service_Genomics_Datasets_Resource:: (7 methods):
create()
delete()
get()
listDatasets()
patch()
undelete()
update()
Google_Service_Genomics_Experimental_Resource:: (0 methods):
Google_Service_Genomics_ExperimentalJobs_Resource:: (1 method):
create()
Google_Service_Genomics_Jobs_Resource:: (3 methods):
cancel()
get()
search()
Google_Service_Genomics_Reads_Resource:: (1 method):
search()
Google_Service_Genomics_Readsets_Resource:: (7 methods):
delete()
export()
get()
import()
patch()
search()
update()
Google_Service_Genomics_ReadsetsCoveragebuckets_Resource:: (1 method):
listReadsetsCoveragebuckets()
Google_Service_Genomics_Variants_Resource:: (9 methods):
create()
delete()
export()
get()
getSummary()
import()
patch()
search()
update()
Google_Service_Genomics_Beacon:: (2 methods):
setExists()
getExists()
Google_Service_Genomics_Call:: (12 methods):
setCallsetId()
getCallsetId()
setCallsetName()
getCallsetName()
setGenotype()
getGenotype()
setGenotypeLikelihood()
getGenotypeLikelihood()
setInfo()
getInfo()
setPhaseset()
getPhaseset()
Google_Service_Genomics_CallInfo:: (0 methods):
Google_Service_Genomics_Callset:: (10 methods):
setCreated()
getCreated()
setId()
getId()
setInfo()
getInfo()
setName()
getName()
setVariantsetId()
getVariantsetId()
Google_Service_Genomics_CallsetInfo:: (0 methods):
Google_Service_Genomics_ContigBound:: (4 methods):
setContig()
getContig()
setUpperBound()
getUpperBound()
Google_Service_Genomics_CoverageBucket:: (4 methods):
setMeanCoverage()
getMeanCoverage()
setRange()
getRange()
Google_Service_Genomics_Dataset:: (8 methods):
setId()
getId()
setIsPublic()
getIsPublic()
setName()
getName()
setProjectId()
getProjectId()
Google_Service_Genomics_ExperimentalCreateJobRequest:: (12 methods):
setAlign()
getAlign()
setCallVariants()
getCallVariants()
setGcsOutputPath()
getGcsOutputPath()
setPairedSourceUris()
getPairedSourceUris()
setProjectId()
getProjectId()
setSourceUris()
getSourceUris()
Google_Service_Genomics_ExperimentalCreateJobResponse:: (2 methods):
setJobId()
getJobId()
Google_Service_Genomics_ExportReadsetsRequest:: (8 methods):
setExportUri()
getExportUri()
setProjectId()
getProjectId()
setReadsetIds()
getReadsetIds()
setReferenceNames()
getReferenceNames()
Google_Service_Genomics_ExportReadsetsResponse:: (2 methods):
setJobId()
getJobId()
Google_Service_Genomics_ExportVariantsRequest:: (12 methods):
setBigqueryDataset()
getBigqueryDataset()
setBigqueryTable()
getBigqueryTable()
setCallsetIds()
getCallsetIds()
setFormat()
getFormat()
setProjectId()
getProjectId()
setVariantsetId()
getVariantsetId()
Google_Service_Genomics_ExportVariantsResponse:: (2 methods):
setJobId()
getJobId()
Google_Service_Genomics_GenomicRange:: (6 methods):
setSequenceEnd()
getSequenceEnd()
setSequenceName()
getSequenceName()
setSequenceStart()
getSequenceStart()
Google_Service_Genomics_GetVariantsSummaryResponse:: (4 methods):
setContigBounds()
getContigBounds()
setMetadata()
getMetadata()
Google_Service_Genomics_Header:: (4 methods):
setSortingOrder()
getSortingOrder()
setVersion()
getVersion()
Google_Service_Genomics_HeaderSection:: (14 methods):
setComments()
getComments()
setFileUri()
getFileUri()
setFilename()
getFilename()
setHeaders()
getHeaders()
setPrograms()
getPrograms()
setReadGroups()
getReadGroups()
setRefSequences()
getRefSequences()
Google_Service_Genomics_ImportReadsetsRequest:: (4 methods):
setDatasetId()
getDatasetId()
setSourceUris()
getSourceUris()
Google_Service_Genomics_ImportReadsetsResponse:: (2 methods):
setJobId()
getJobId()
Google_Service_Genomics_ImportVariantsRequest:: (6 methods):
setFormat()
getFormat()
setSourceUris()
getSourceUris()
setVariantsetId()
getVariantsetId()
Google_Service_Genomics_ImportVariantsResponse:: (2 methods):
setJobId()
getJobId()
Google_Service_Genomics_Job:: (18 methods):
setCreated()
getCreated()
setDescription()
getDescription()
setErrors()
getErrors()
setId()
getId()
setImportedIds()
getImportedIds()
setProjectId()
getProjectId()
setRequest()
getRequest()
setStatus()
getStatus()
setWarnings()
getWarnings()
Google_Service_Genomics_JobRequest:: (6 methods):
setDestination()
getDestination()
setSource()
getSource()
setType()
getType()
Google_Service_Genomics_ListCoverageBucketsResponse:: (6 methods):
setBucketWidth()
getBucketWidth()
setCoverageBuckets()
getCoverageBuckets()
setNextPageToken()
getNextPageToken()
Google_Service_Genomics_ListDatasetsResponse:: (4 methods):
setDatasets()
getDatasets()
setNextPageToken()
getNextPageToken()
Google_Service_Genomics_Metadata:: (14 methods):
setDescription()
getDescription()
setId()
getId()
setInfo()
getInfo()
setKey()
getKey()
setNumber()
getNumber()
setType()
getType()
setValue()
getValue()
Google_Service_Genomics_MetadataInfo:: (0 methods):
Google_Service_Genomics_Program:: (10 methods):
setCommandLine()
getCommandLine()
setId()
getId()
setName()
getName()
setPrevProgramId()
getPrevProgramId()
setVersion()
getVersion()
Google_Service_Genomics_Read:: (30 methods):
setAlignedBases()
getAlignedBases()
setBaseQuality()
getBaseQuality()
setCigar()
getCigar()
setFlags()
getFlags()
setId()
getId()
setMappingQuality()
getMappingQuality()
setMatePosition()
getMatePosition()
setMateReferenceSequenceName()
getMateReferenceSequenceName()
setName()
getName()
setOriginalBases()
getOriginalBases()
setPosition()
getPosition()
setReadsetId()
getReadsetId()
setReferenceSequenceName()
getReferenceSequenceName()
setTags()
getTags()
setTemplateLength()
getTemplateLength()
Google_Service_Genomics_ReadGroup:: (24 methods):
setDate()
getDate()
setDescription()
getDescription()
setFlowOrder()
getFlowOrder()
setId()
getId()
setKeySequence()
getKeySequence()
setLibrary()
getLibrary()
setPlatformUnit()
getPlatformUnit()
setPredictedInsertSize()
getPredictedInsertSize()
setProcessingProgram()
getProcessingProgram()
setSample()
getSample()
setSequencingCenterName()
getSequencingCenterName()
setSequencingTechnology()
getSequencingTechnology()
Google_Service_Genomics_ReadTags:: (0 methods):
Google_Service_Genomics_Readset:: (8 methods):
setDatasetId()
getDatasetId()
setFileData()
getFileData()
setId()
getId()
setName()
getName()
Google_Service_Genomics_ReferenceSequence:: (12 methods):
setAssemblyId()
getAssemblyId()
setLength()
getLength()
setMd5Checksum()
getMd5Checksum()
setName()
getName()
setSpecies()
getSpecies()
setUri()
getUri()
Google_Service_Genomics_SearchCallsetsRequest:: (8 methods):
setMaxResults()
getMaxResults()
setName()
getName()
setPageToken()
getPageToken()
setVariantsetIds()
getVariantsetIds()
Google_Service_Genomics_SearchCallsetsResponse:: (4 methods):
setCallsets()
getCallsets()
setNextPageToken()
getNextPageToken()
Google_Service_Genomics_SearchJobsRequest:: (12 methods):
setCreatedAfter()
getCreatedAfter()
setCreatedBefore()
getCreatedBefore()
setMaxResults()
getMaxResults()
setPageToken()
getPageToken()
setProjectId()
getProjectId()
setStatus()
getStatus()
Google_Service_Genomics_SearchJobsResponse:: (4 methods):
setJobs()
getJobs()
setNextPageToken()
getNextPageToken()
Google_Service_Genomics_SearchReadsRequest:: (12 methods):
setMaxResults()
getMaxResults()
setPageToken()
getPageToken()
setReadsetIds()
getReadsetIds()
setSequenceEnd()
getSequenceEnd()
setSequenceName()
getSequenceName()
setSequenceStart()
getSequenceStart()
Google_Service_Genomics_SearchReadsResponse:: (4 methods):
setNextPageToken()
getNextPageToken()
setReads()
getReads()
Google_Service_Genomics_SearchReadsetsRequest:: (8 methods):
setDatasetIds()
getDatasetIds()
setMaxResults()
getMaxResults()
setName()
getName()
setPageToken()
getPageToken()
Google_Service_Genomics_SearchReadsetsResponse:: (4 methods):
setNextPageToken()
getNextPageToken()
setReadsets()
getReadsets()
Google_Service_Genomics_SearchVariantsRequest:: (18 methods):
setCallsetIds()
getCallsetIds()
setCallsetNames()
getCallsetNames()
setContig()
getContig()
setEndPosition()
getEndPosition()
setMaxResults()
getMaxResults()
setPageToken()
getPageToken()
setStartPosition()
getStartPosition()
setVariantName()
getVariantName()
setVariantsetId()
getVariantsetId()
Google_Service_Genomics_SearchVariantsResponse:: (4 methods):
setNextPageToken()
getNextPageToken()
setVariants()
getVariants()
Google_Service_Genomics_Variant:: (22 methods):
setAlternateBases()
getAlternateBases()
setCalls()
getCalls()
setContig()
getContig()
setCreated()
getCreated()
setEnd()
getEnd()
setId()
getId()
setInfo()
getInfo()
setNames()
getNames()
setPosition()
getPosition()
setReferenceBases()
getReferenceBases()
setVariantsetId()
getVariantsetId()
Google_Service_Genomics_VariantInfo:: (0 methods):
Class: Google_Service_Genomics - X-Ref
Service definition for Genomics (v1beta).| __construct(Google_Client $client) X-Ref |
| Constructs the internal representation of the Genomics service. param: Google_Client $client |
Class: Google_Service_Genomics_Beacons_Resource - X-Ref
The "beacons" collection of methods.| get($variantsetId, $optParams = array() X-Ref |
| This is an experimental API that provides a Global Alliance for Genomics and Health Beacon. It may change at any time. (beacons.get) param: string $variantsetId param: array $optParams Optional parameters. return: Google_Service_Genomics_Beacon |
Class: Google_Service_Genomics_Callsets_Resource - X-Ref
The "callsets" collection of methods.| create(Google_Service_Genomics_Callset $postBody, $optParams = array() X-Ref |
| Creates a new callset. (callsets.create) param: Google_Callset $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_Callset |
| delete($callsetId, $optParams = array() X-Ref |
| Deletes a callset. (callsets.delete) param: string $callsetId param: array $optParams Optional parameters. |
| get($callsetId, $optParams = array() X-Ref |
| Gets a callset by ID. (callsets.get) param: string $callsetId param: array $optParams Optional parameters. return: Google_Service_Genomics_Callset |
| patch($callsetId, Google_Service_Genomics_Callset $postBody, $optParams = array() X-Ref |
| Updates a callset. This method supports patch semantics. (callsets.patch) param: string $callsetId param: Google_Callset $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_Callset |
| search(Google_Service_Genomics_SearchCallsetsRequest $postBody, $optParams = array() X-Ref |
| Gets a list of callsets matching the criteria. (callsets.search) param: Google_SearchCallsetsRequest $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_SearchCallsetsResponse |
| update($callsetId, Google_Service_Genomics_Callset $postBody, $optParams = array() X-Ref |
| Updates a callset. (callsets.update) param: string $callsetId param: Google_Callset $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_Callset |
Class: Google_Service_Genomics_Datasets_Resource - X-Ref
The "datasets" collection of methods.| create(Google_Service_Genomics_Dataset $postBody, $optParams = array() X-Ref |
| Creates a new dataset. (datasets.create) param: Google_Dataset $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_Dataset |
| delete($datasetId, $optParams = array() X-Ref |
| Deletes a dataset. (datasets.delete) param: string $datasetId param: array $optParams Optional parameters. |
| get($datasetId, $optParams = array() X-Ref |
| Gets a dataset by ID. (datasets.get) param: string $datasetId param: array $optParams Optional parameters. return: Google_Service_Genomics_Dataset |
| listDatasets($optParams = array() X-Ref |
| Lists all datasets. (datasets.listDatasets) param: array $optParams Optional parameters. return: Google_Service_Genomics_ListDatasetsResponse |
| patch($datasetId, Google_Service_Genomics_Dataset $postBody, $optParams = array() X-Ref |
| Updates a dataset. This method supports patch semantics. (datasets.patch) param: string $datasetId param: Google_Dataset $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_Dataset |
| undelete($datasetId, $optParams = array() X-Ref |
| Undeletes a dataset by restoring a dataset which was deleted via this API. This operation is only possible for a week after the deletion occurred. (datasets.undelete) param: string $datasetId param: array $optParams Optional parameters. return: Google_Service_Genomics_Dataset |
| update($datasetId, Google_Service_Genomics_Dataset $postBody, $optParams = array() X-Ref |
| Updates a dataset. (datasets.update) param: string $datasetId param: Google_Dataset $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_Dataset |
Class: Google_Service_Genomics_Experimental_Resource - X-Ref
The "experimental" collection of methods.Class: Google_Service_Genomics_ExperimentalJobs_Resource - X-Ref
The "jobs" collection of methods.| create(Google_Service_Genomics_ExperimentalCreateJobRequest $postBody, $optParams = array() X-Ref |
| Creates and asynchronously runs an ad-hoc job. This is an experimental call and may be removed or changed at any time. (jobs.create) param: Google_ExperimentalCreateJobRequest $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_ExperimentalCreateJobResponse |
Class: Google_Service_Genomics_Jobs_Resource - X-Ref
The "jobs" collection of methods.| cancel($jobId, $optParams = array() X-Ref |
| Cancels a job by ID. Note that it is possible for partial results to be generated and stored for cancelled jobs. (jobs.cancel) param: string $jobId param: array $optParams Optional parameters. |
| get($jobId, $optParams = array() X-Ref |
| Gets a job by ID. (jobs.get) param: string $jobId param: array $optParams Optional parameters. return: Google_Service_Genomics_Job |
| search(Google_Service_Genomics_SearchJobsRequest $postBody, $optParams = array() X-Ref |
| Gets a list of jobs matching the criteria. (jobs.search) param: Google_SearchJobsRequest $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_SearchJobsResponse |
Class: Google_Service_Genomics_Reads_Resource - X-Ref
The "reads" collection of methods.| search(Google_Service_Genomics_SearchReadsRequest $postBody, $optParams = array() X-Ref |
| Gets a list of reads for one or more readsets. Reads search operates over a genomic coordinate space of reference sequence & position defined over the reference sequences to which the requested readsets are aligned. If a target positional range is specified, search returns all reads whose alignment to the reference genome overlap the range. A query which specifies only readset IDs yields all reads in those readsets, including unmapped reads. All reads returned (including reads on subsequent pages) are ordered by genomic coordinate (reference sequence & position). Reads with equivalent genomic coordinates are returned in a deterministic order. (reads.search) param: Google_SearchReadsRequest $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_SearchReadsResponse |
Class: Google_Service_Genomics_Readsets_Resource - X-Ref
The "readsets" collection of methods.| delete($readsetId, $optParams = array() X-Ref |
| Deletes a readset. (readsets.delete) param: string $readsetId param: array $optParams Optional parameters. |
| export(Google_Service_Genomics_ExportReadsetsRequest $postBody, $optParams = array() X-Ref |
| Exports readsets to a BAM file in Google Cloud Storage. Note that currently there may be some differences between exported BAM files and the original BAM file at the time of import. In particular, comments in the input file header will not be preserved, and some custom tags will be converted to strings. (readsets.export) param: Google_ExportReadsetsRequest $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_ExportReadsetsResponse |
| get($readsetId, $optParams = array() X-Ref |
| Gets a readset by ID. (readsets.get) param: string $readsetId param: array $optParams Optional parameters. return: Google_Service_Genomics_Readset |
| import(Google_Service_Genomics_ImportReadsetsRequest $postBody, $optParams = array() X-Ref |
| Creates readsets by asynchronously importing the provided information. Note that currently comments in the input file header are not imported and some custom tags will be converted to strings, rather than preserving tag types. The caller must have WRITE permissions to the dataset. (readsets.import) param: Google_ImportReadsetsRequest $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_ImportReadsetsResponse |
| patch($readsetId, Google_Service_Genomics_Readset $postBody, $optParams = array() X-Ref |
| Updates a readset. This method supports patch semantics. (readsets.patch) param: string $readsetId param: Google_Readset $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_Readset |
| search(Google_Service_Genomics_SearchReadsetsRequest $postBody, $optParams = array() X-Ref |
| Gets a list of readsets matching the criteria. (readsets.search) param: Google_SearchReadsetsRequest $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_SearchReadsetsResponse |
| update($readsetId, Google_Service_Genomics_Readset $postBody, $optParams = array() X-Ref |
| Updates a readset. (readsets.update) param: string $readsetId param: Google_Readset $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_Readset |
Class: Google_Service_Genomics_ReadsetsCoveragebuckets_Resource - X-Ref
The "coveragebuckets" collection of methods.| listReadsetsCoveragebuckets($readsetId, $optParams = array() X-Ref |
| Lists fixed width coverage buckets for a readset, each of which correspond to a range of a reference sequence. Each bucket summarizes coverage information across its corresponding genomic range. Coverage is defined as the number of reads which are aligned to a given base in the reference sequence. Coverage buckets are available at various bucket widths, enabling various coverage "zoom levels". The caller must have READ permissions for the target readset. (coveragebuckets.listReadsetsCoveragebuckets) param: string $readsetId param: array $optParams Optional parameters. return: Google_Service_Genomics_ListCoverageBucketsResponse |
Class: Google_Service_Genomics_Variants_Resource - X-Ref
The "variants" collection of methods.| create(Google_Service_Genomics_Variant $postBody, $optParams = array() X-Ref |
| Creates a new variant. (variants.create) param: Google_Variant $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_Variant |
| delete($variantId, $optParams = array() X-Ref |
| Deletes a variant. (variants.delete) param: string $variantId param: array $optParams Optional parameters. |
| export(Google_Service_Genomics_ExportVariantsRequest $postBody, $optParams = array() X-Ref |
| Exports variant data to an external destination. (variants.export) param: Google_ExportVariantsRequest $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_ExportVariantsResponse |
| get($variantId, $optParams = array() X-Ref |
| Gets a variant by ID. (variants.get) param: string $variantId param: array $optParams Optional parameters. return: Google_Service_Genomics_Variant |
| getSummary($optParams = array() X-Ref |
| Gets a summary of all the variant data in a variantset. (variants.getSummary) param: array $optParams Optional parameters. return: Google_Service_Genomics_GetVariantsSummaryResponse |
| import(Google_Service_Genomics_ImportVariantsRequest $postBody, $optParams = array() X-Ref |
| Creates variant data by asynchronously importing the provided information. (variants.import) param: Google_ImportVariantsRequest $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_ImportVariantsResponse |
| patch($variantId, Google_Service_Genomics_Variant $postBody, $optParams = array() X-Ref |
| Updates a variant. This method supports patch semantics. (variants.patch) param: string $variantId param: Google_Variant $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_Variant |
| search(Google_Service_Genomics_SearchVariantsRequest $postBody, $optParams = array() X-Ref |
| Gets a list of variants matching the criteria. (variants.search) param: Google_SearchVariantsRequest $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_SearchVariantsResponse |
| update($variantId, Google_Service_Genomics_Variant $postBody, $optParams = array() X-Ref |
| Updates a variant. (variants.update) param: string $variantId param: Google_Variant $postBody param: array $optParams Optional parameters. return: Google_Service_Genomics_Variant |
Class: Google_Service_Genomics_Beacon - X-Ref
Class: Google_Service_Genomics_Call - X-Ref
| setCallsetId($callsetId) X-Ref |
| No description |
| getCallsetId() X-Ref |
| No description |
| setCallsetName($callsetName) X-Ref |
| No description |
| getCallsetName() X-Ref |
| No description |
| setGenotype($genotype) X-Ref |
| No description |
| getGenotype() X-Ref |
| No description |
| setGenotypeLikelihood($genotypeLikelihood) X-Ref |
| No description |
| getGenotypeLikelihood() X-Ref |
| No description |
| setInfo($info) X-Ref |
| No description |
| getInfo() X-Ref |
| No description |
| setPhaseset($phaseset) X-Ref |
| No description |
| getPhaseset() X-Ref |
| No description |
Class: Google_Service_Genomics_CallInfo - X-Ref
Class: Google_Service_Genomics_Callset - X-Ref
| setCreated($created) X-Ref |
| No description |
| getCreated() X-Ref |
| No description |
| setId($id) X-Ref |
| No description |
| getId() X-Ref |
| No description |
| setInfo($info) X-Ref |
| No description |
| getInfo() X-Ref |
| No description |
| setName($name) X-Ref |
| No description |
| getName() X-Ref |
| No description |
| setVariantsetId($variantsetId) X-Ref |
| No description |
| getVariantsetId() X-Ref |
| No description |
Class: Google_Service_Genomics_CallsetInfo - X-Ref
Class: Google_Service_Genomics_ContigBound - X-Ref
| setContig($contig) X-Ref |
| No description |
| getContig() X-Ref |
| No description |
| setUpperBound($upperBound) X-Ref |
| No description |
| getUpperBound() X-Ref |
| No description |
Class: Google_Service_Genomics_CoverageBucket - X-Ref
| setMeanCoverage($meanCoverage) X-Ref |
| No description |
| getMeanCoverage() X-Ref |
| No description |
| setRange(Google_Service_Genomics_GenomicRange $range) X-Ref |
| No description |
| getRange() X-Ref |
| No description |
Class: Google_Service_Genomics_Dataset - X-Ref
| setId($id) X-Ref |
| No description |
| getId() X-Ref |
| No description |
| setIsPublic($isPublic) X-Ref |
| No description |
| getIsPublic() X-Ref |
| No description |
| setName($name) X-Ref |
| No description |
| getName() X-Ref |
| No description |
| setProjectId($projectId) X-Ref |
| No description |
| getProjectId() X-Ref |
| No description |
Class: Google_Service_Genomics_ExperimentalCreateJobRequest - X-Ref
| setAlign($align) X-Ref |
| No description |
| getAlign() X-Ref |
| No description |
| setCallVariants($callVariants) X-Ref |
| No description |
| getCallVariants() X-Ref |
| No description |
| setGcsOutputPath($gcsOutputPath) X-Ref |
| No description |
| getGcsOutputPath() X-Ref |
| No description |
| setPairedSourceUris($pairedSourceUris) X-Ref |
| No description |
| getPairedSourceUris() X-Ref |
| No description |
| setProjectId($projectId) X-Ref |
| No description |
| getProjectId() X-Ref |
| No description |
| setSourceUris($sourceUris) X-Ref |
| No description |
| getSourceUris() X-Ref |
| No description |
Class: Google_Service_Genomics_ExportReadsetsRequest - X-Ref
| setExportUri($exportUri) X-Ref |
| No description |
| getExportUri() X-Ref |
| No description |
| setProjectId($projectId) X-Ref |
| No description |
| getProjectId() X-Ref |
| No description |
| setReadsetIds($readsetIds) X-Ref |
| No description |
| getReadsetIds() X-Ref |
| No description |
| setReferenceNames($referenceNames) X-Ref |
| No description |
| getReferenceNames() X-Ref |
| No description |
Class: Google_Service_Genomics_ExportVariantsRequest - X-Ref
| setBigqueryDataset($bigqueryDataset) X-Ref |
| No description |
| getBigqueryDataset() X-Ref |
| No description |
| setBigqueryTable($bigqueryTable) X-Ref |
| No description |
| getBigqueryTable() X-Ref |
| No description |
| setCallsetIds($callsetIds) X-Ref |
| No description |
| getCallsetIds() X-Ref |
| No description |
| setFormat($format) X-Ref |
| No description |
| getFormat() X-Ref |
| No description |
| setProjectId($projectId) X-Ref |
| No description |
| getProjectId() X-Ref |
| No description |
| setVariantsetId($variantsetId) X-Ref |
| No description |
| getVariantsetId() X-Ref |
| No description |
Class: Google_Service_Genomics_GenomicRange - X-Ref
| setSequenceEnd($sequenceEnd) X-Ref |
| No description |
| getSequenceEnd() X-Ref |
| No description |
| setSequenceName($sequenceName) X-Ref |
| No description |
| getSequenceName() X-Ref |
| No description |
| setSequenceStart($sequenceStart) X-Ref |
| No description |
| getSequenceStart() X-Ref |
| No description |
Class: Google_Service_Genomics_GetVariantsSummaryResponse - X-Ref
| setContigBounds($contigBounds) X-Ref |
| No description |
| getContigBounds() X-Ref |
| No description |
| setMetadata($metadata) X-Ref |
| No description |
| getMetadata() X-Ref |
| No description |
Class: Google_Service_Genomics_Header - X-Ref
| setSortingOrder($sortingOrder) X-Ref |
| No description |
| getSortingOrder() X-Ref |
| No description |
| setVersion($version) X-Ref |
| No description |
| getVersion() X-Ref |
| No description |
Class: Google_Service_Genomics_HeaderSection - X-Ref
| setComments($comments) X-Ref |
| No description |
| getComments() X-Ref |
| No description |
| setFileUri($fileUri) X-Ref |
| No description |
| getFileUri() X-Ref |
| No description |
| setFilename($filename) X-Ref |
| No description |
| getFilename() X-Ref |
| No description |
| setHeaders($headers) X-Ref |
| No description |
| getHeaders() X-Ref |
| No description |
| setPrograms($programs) X-Ref |
| No description |
| getPrograms() X-Ref |
| No description |
| setReadGroups($readGroups) X-Ref |
| No description |
| getReadGroups() X-Ref |
| No description |
| setRefSequences($refSequences) X-Ref |
| No description |
| getRefSequences() X-Ref |
| No description |
Class: Google_Service_Genomics_ImportReadsetsRequest - X-Ref
| setDatasetId($datasetId) X-Ref |
| No description |
| getDatasetId() X-Ref |
| No description |
| setSourceUris($sourceUris) X-Ref |
| No description |
| getSourceUris() X-Ref |
| No description |
Class: Google_Service_Genomics_ImportVariantsRequest - X-Ref
| setFormat($format) X-Ref |
| No description |
| getFormat() X-Ref |
| No description |
| setSourceUris($sourceUris) X-Ref |
| No description |
| getSourceUris() X-Ref |
| No description |
| setVariantsetId($variantsetId) X-Ref |
| No description |
| getVariantsetId() X-Ref |
| No description |
Class: Google_Service_Genomics_Job - X-Ref
| setCreated($created) X-Ref |
| No description |
| getCreated() X-Ref |
| No description |
| setDescription($description) X-Ref |
| No description |
| getDescription() X-Ref |
| No description |
| setErrors($errors) X-Ref |
| No description |
| getErrors() X-Ref |
| No description |
| setId($id) X-Ref |
| No description |
| getId() X-Ref |
| No description |
| setImportedIds($importedIds) X-Ref |
| No description |
| getImportedIds() X-Ref |
| No description |
| setProjectId($projectId) X-Ref |
| No description |
| getProjectId() X-Ref |
| No description |
| setRequest(Google_Service_Genomics_JobRequest $request) X-Ref |
| No description |
| getRequest() X-Ref |
| No description |
| setStatus($status) X-Ref |
| No description |
| getStatus() X-Ref |
| No description |
| setWarnings($warnings) X-Ref |
| No description |
| getWarnings() X-Ref |
| No description |
Class: Google_Service_Genomics_JobRequest - X-Ref
| setDestination($destination) X-Ref |
| No description |
| getDestination() X-Ref |
| No description |
| setSource($source) X-Ref |
| No description |
| getSource() X-Ref |
| No description |
| setType($type) X-Ref |
| No description |
| getType() X-Ref |
| No description |
Class: Google_Service_Genomics_ListCoverageBucketsResponse - X-Ref
| setBucketWidth($bucketWidth) X-Ref |
| No description |
| getBucketWidth() X-Ref |
| No description |
| setCoverageBuckets($coverageBuckets) X-Ref |
| No description |
| getCoverageBuckets() X-Ref |
| No description |
| setNextPageToken($nextPageToken) X-Ref |
| No description |
| getNextPageToken() X-Ref |
| No description |
Class: Google_Service_Genomics_ListDatasetsResponse - X-Ref
| setDatasets($datasets) X-Ref |
| No description |
| getDatasets() X-Ref |
| No description |
| setNextPageToken($nextPageToken) X-Ref |
| No description |
| getNextPageToken() X-Ref |
| No description |
Class: Google_Service_Genomics_Metadata - X-Ref
| setDescription($description) X-Ref |
| No description |
| getDescription() X-Ref |
| No description |
| setId($id) X-Ref |
| No description |
| getId() X-Ref |
| No description |
| setInfo($info) X-Ref |
| No description |
| getInfo() X-Ref |
| No description |
| setKey($key) X-Ref |
| No description |
| getKey() X-Ref |
| No description |
| setNumber($number) X-Ref |
| No description |
| getNumber() X-Ref |
| No description |
| setType($type) X-Ref |
| No description |
| getType() X-Ref |
| No description |
| setValue($value) X-Ref |
| No description |
| getValue() X-Ref |
| No description |
Class: Google_Service_Genomics_Program - X-Ref
| setCommandLine($commandLine) X-Ref |
| No description |
| getCommandLine() X-Ref |
| No description |
| setId($id) X-Ref |
| No description |
| getId() X-Ref |
| No description |
| setName($name) X-Ref |
| No description |
| getName() X-Ref |
| No description |
| setPrevProgramId($prevProgramId) X-Ref |
| No description |
| getPrevProgramId() X-Ref |
| No description |
| setVersion($version) X-Ref |
| No description |
| getVersion() X-Ref |
| No description |
Class: Google_Service_Genomics_Read - X-Ref
| setAlignedBases($alignedBases) X-Ref |
| No description |
| getAlignedBases() X-Ref |
| No description |
| setBaseQuality($baseQuality) X-Ref |
| No description |
| getBaseQuality() X-Ref |
| No description |
| setCigar($cigar) X-Ref |
| No description |
| getCigar() X-Ref |
| No description |
| setFlags($flags) X-Ref |
| No description |
| getFlags() X-Ref |
| No description |
| setId($id) X-Ref |
| No description |
| getId() X-Ref |
| No description |
| setMappingQuality($mappingQuality) X-Ref |
| No description |
| getMappingQuality() X-Ref |
| No description |
| setMatePosition($matePosition) X-Ref |
| No description |
| getMatePosition() X-Ref |
| No description |
| setMateReferenceSequenceName($mateReferenceSequenceName) X-Ref |
| No description |
| getMateReferenceSequenceName() X-Ref |
| No description |
| setName($name) X-Ref |
| No description |
| getName() X-Ref |
| No description |
| setOriginalBases($originalBases) X-Ref |
| No description |
| getOriginalBases() X-Ref |
| No description |
| setPosition($position) X-Ref |
| No description |
| getPosition() X-Ref |
| No description |
| setReadsetId($readsetId) X-Ref |
| No description |
| getReadsetId() X-Ref |
| No description |
| setReferenceSequenceName($referenceSequenceName) X-Ref |
| No description |
| getReferenceSequenceName() X-Ref |
| No description |
| setTags($tags) X-Ref |
| No description |
| getTags() X-Ref |
| No description |
| setTemplateLength($templateLength) X-Ref |
| No description |
| getTemplateLength() X-Ref |
| No description |
Class: Google_Service_Genomics_ReadGroup - X-Ref
| setDate($date) X-Ref |
| No description |
| getDate() X-Ref |
| No description |
| setDescription($description) X-Ref |
| No description |
| getDescription() X-Ref |
| No description |
| setFlowOrder($flowOrder) X-Ref |
| No description |
| getFlowOrder() X-Ref |
| No description |
| setId($id) X-Ref |
| No description |
| getId() X-Ref |
| No description |
| setKeySequence($keySequence) X-Ref |
| No description |
| getKeySequence() X-Ref |
| No description |
| setLibrary($library) X-Ref |
| No description |
| getLibrary() X-Ref |
| No description |
| setPlatformUnit($platformUnit) X-Ref |
| No description |
| getPlatformUnit() X-Ref |
| No description |
| setPredictedInsertSize($predictedInsertSize) X-Ref |
| No description |
| getPredictedInsertSize() X-Ref |
| No description |
| setProcessingProgram($processingProgram) X-Ref |
| No description |
| getProcessingProgram() X-Ref |
| No description |
| setSample($sample) X-Ref |
| No description |
| getSample() X-Ref |
| No description |
| setSequencingCenterName($sequencingCenterName) X-Ref |
| No description |
| getSequencingCenterName() X-Ref |
| No description |
| setSequencingTechnology($sequencingTechnology) X-Ref |
| No description |
| getSequencingTechnology() X-Ref |
| No description |
Class: Google_Service_Genomics_ReadTags - X-Ref
Class: Google_Service_Genomics_Readset - X-Ref
| setDatasetId($datasetId) X-Ref |
| No description |
| getDatasetId() X-Ref |
| No description |
| setFileData($fileData) X-Ref |
| No description |
| getFileData() X-Ref |
| No description |
| setId($id) X-Ref |
| No description |
| getId() X-Ref |
| No description |
| setName($name) X-Ref |
| No description |
| getName() X-Ref |
| No description |
Class: Google_Service_Genomics_ReferenceSequence - X-Ref
| setAssemblyId($assemblyId) X-Ref |
| No description |
| getAssemblyId() X-Ref |
| No description |
| setLength($length) X-Ref |
| No description |
| getLength() X-Ref |
| No description |
| setMd5Checksum($md5Checksum) X-Ref |
| No description |
| getMd5Checksum() X-Ref |
| No description |
| setName($name) X-Ref |
| No description |
| getName() X-Ref |
| No description |
| setSpecies($species) X-Ref |
| No description |
| getSpecies() X-Ref |
| No description |
| setUri($uri) X-Ref |
| No description |
| getUri() X-Ref |
| No description |
Class: Google_Service_Genomics_SearchCallsetsRequest - X-Ref
| setMaxResults($maxResults) X-Ref |
| No description |
| getMaxResults() X-Ref |
| No description |
| setName($name) X-Ref |
| No description |
| getName() X-Ref |
| No description |
| setPageToken($pageToken) X-Ref |
| No description |
| getPageToken() X-Ref |
| No description |
| setVariantsetIds($variantsetIds) X-Ref |
| No description |
| getVariantsetIds() X-Ref |
| No description |
Class: Google_Service_Genomics_SearchCallsetsResponse - X-Ref
| setCallsets($callsets) X-Ref |
| No description |
| getCallsets() X-Ref |
| No description |
| setNextPageToken($nextPageToken) X-Ref |
| No description |
| getNextPageToken() X-Ref |
| No description |
Class: Google_Service_Genomics_SearchJobsRequest - X-Ref
| setCreatedAfter($createdAfter) X-Ref |
| No description |
| getCreatedAfter() X-Ref |
| No description |
| setCreatedBefore($createdBefore) X-Ref |
| No description |
| getCreatedBefore() X-Ref |
| No description |
| setMaxResults($maxResults) X-Ref |
| No description |
| getMaxResults() X-Ref |
| No description |
| setPageToken($pageToken) X-Ref |
| No description |
| getPageToken() X-Ref |
| No description |
| setProjectId($projectId) X-Ref |
| No description |
| getProjectId() X-Ref |
| No description |
| setStatus($status) X-Ref |
| No description |
| getStatus() X-Ref |
| No description |
Class: Google_Service_Genomics_SearchJobsResponse - X-Ref
| setJobs($jobs) X-Ref |
| No description |
| getJobs() X-Ref |
| No description |
| setNextPageToken($nextPageToken) X-Ref |
| No description |
| getNextPageToken() X-Ref |
| No description |
Class: Google_Service_Genomics_SearchReadsRequest - X-Ref
| setMaxResults($maxResults) X-Ref |
| No description |
| getMaxResults() X-Ref |
| No description |
| setPageToken($pageToken) X-Ref |
| No description |
| getPageToken() X-Ref |
| No description |
| setReadsetIds($readsetIds) X-Ref |
| No description |
| getReadsetIds() X-Ref |
| No description |
| setSequenceEnd($sequenceEnd) X-Ref |
| No description |
| getSequenceEnd() X-Ref |
| No description |
| setSequenceName($sequenceName) X-Ref |
| No description |
| getSequenceName() X-Ref |
| No description |
| setSequenceStart($sequenceStart) X-Ref |
| No description |
| getSequenceStart() X-Ref |
| No description |
Class: Google_Service_Genomics_SearchReadsResponse - X-Ref
| setNextPageToken($nextPageToken) X-Ref |
| No description |
| getNextPageToken() X-Ref |
| No description |
| setReads($reads) X-Ref |
| No description |
| getReads() X-Ref |
| No description |
Class: Google_Service_Genomics_SearchReadsetsRequest - X-Ref
| setDatasetIds($datasetIds) X-Ref |
| No description |
| getDatasetIds() X-Ref |
| No description |
| setMaxResults($maxResults) X-Ref |
| No description |
| getMaxResults() X-Ref |
| No description |
| setName($name) X-Ref |
| No description |
| getName() X-Ref |
| No description |
| setPageToken($pageToken) X-Ref |
| No description |
| getPageToken() X-Ref |
| No description |
Class: Google_Service_Genomics_SearchReadsetsResponse - X-Ref
| setNextPageToken($nextPageToken) X-Ref |
| No description |
| getNextPageToken() X-Ref |
| No description |
| setReadsets($readsets) X-Ref |
| No description |
| getReadsets() X-Ref |
| No description |
Class: Google_Service_Genomics_SearchVariantsRequest - X-Ref
| setCallsetIds($callsetIds) X-Ref |
| No description |
| getCallsetIds() X-Ref |
| No description |
| setCallsetNames($callsetNames) X-Ref |
| No description |
| getCallsetNames() X-Ref |
| No description |
| setContig($contig) X-Ref |
| No description |
| getContig() X-Ref |
| No description |
| setEndPosition($endPosition) X-Ref |
| No description |
| getEndPosition() X-Ref |
| No description |
| setMaxResults($maxResults) X-Ref |
| No description |
| getMaxResults() X-Ref |
| No description |
| setPageToken($pageToken) X-Ref |
| No description |
| getPageToken() X-Ref |
| No description |
| setStartPosition($startPosition) X-Ref |
| No description |
| getStartPosition() X-Ref |
| No description |
| setVariantName($variantName) X-Ref |
| No description |
| getVariantName() X-Ref |
| No description |
| setVariantsetId($variantsetId) X-Ref |
| No description |
| getVariantsetId() X-Ref |
| No description |
Class: Google_Service_Genomics_SearchVariantsResponse - X-Ref
| setNextPageToken($nextPageToken) X-Ref |
| No description |
| getNextPageToken() X-Ref |
| No description |
| setVariants($variants) X-Ref |
| No description |
| getVariants() X-Ref |
| No description |
Class: Google_Service_Genomics_Variant - X-Ref
| setAlternateBases($alternateBases) X-Ref |
| No description |
| getAlternateBases() X-Ref |
| No description |
| setCalls($calls) X-Ref |
| No description |
| getCalls() X-Ref |
| No description |
| setContig($contig) X-Ref |
| No description |
| getContig() X-Ref |
| No description |
| setCreated($created) X-Ref |
| No description |
| getCreated() X-Ref |
| No description |
| setEnd($end) X-Ref |
| No description |
| getEnd() X-Ref |
| No description |
| setId($id) X-Ref |
| No description |
| getId() X-Ref |
| No description |
| setInfo($info) X-Ref |
| No description |
| getInfo() X-Ref |
| No description |
| setNames($names) X-Ref |
| No description |
| getNames() X-Ref |
| No description |
| setPosition($position) X-Ref |
| No description |
| getPosition() X-Ref |
| No description |
| setReferenceBases($referenceBases) X-Ref |
| No description |
| getReferenceBases() X-Ref |
| No description |
| setVariantsetId($variantsetId) X-Ref |
| No description |
| getVariantsetId() X-Ref |
| No description |
Class: Google_Service_Genomics_VariantInfo - X-Ref
| Generated: Fri Nov 28 20:29:05 2014 | Cross-referenced by PHPXref 0.7.1 |