edist_state< CHR > Class Template Reference

List of all members.

Public Member Functions
	edist_state (const CHR *ptr1, int len1, const CHR *ptr2, int len2)
	~edist_state ()
int	get_f_kp (int k, int p) const
void	set_f_kp (int k, int p, int val)
bool	is_transposed (int pos1, int pos2)
void	edist_calc_f_kp (int k, int p)
Private Member Functions
int	calc_index (int k, int p) const
Private Attributes
edist_seq< CHR >	seq1
edist_seq< CHR >	seq2
int *	fkp
int	fkp_cols
int	maxdist

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Detailed Description

template<class CHR>
class edist_state< CHR >

Definition at line 49 of file editdistance.cc.

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Constructor & Destructor Documentation

template<class CHR>

edist_state< CHR >::edist_state	(	const CHR *	ptr1,
		int	len1,
		const CHR *	ptr2,
		int	len2
	)			[inline]

Definition at line 133 of file editdistance.cc.

References Assert, edist_state< CHR >::fkp, edist_state< CHR >::fkp_cols, INF, edist_state< CHR >::maxdist, and edist_state< CHR >::set_f_kp().

template<class CHR>

edist_state< CHR >::~edist_state

(

)

[inline]

Definition at line 162 of file editdistance.cc.

References edist_state< CHR >::fkp.

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Member Function Documentation

template<class CHR>

int edist_state< CHR >::calc_index	(	int	k,
		int	p
	)			const [inline, private]

Definition at line 65 of file editdistance.cc.

References edist_state< CHR >::fkp_cols, and edist_state< CHR >::maxdist.

Referenced by edist_state< CHR >::get_f_kp(), and edist_state< CHR >::set_f_kp().

template<class CHR>

int edist_state< CHR >::get_f_kp	(	int	k,
		int	p
	)			const [inline]

Definition at line 75 of file editdistance.cc.

References edist_state< CHR >::calc_index(), and edist_state< CHR >::fkp.

Referenced by edist_state< CHR >::edist_calc_f_kp(), and seqcmp_editdist().

template<class CHR>

void edist_state< CHR >::set_f_kp	(	int	k,
		int	p,
		int	val
	)			[inline]

Definition at line 79 of file editdistance.cc.

References edist_state< CHR >::calc_index(), and edist_state< CHR >::fkp.

Referenced by edist_state< CHR >::edist_calc_f_kp(), and edist_state< CHR >::edist_state().

template<class CHR>

bool edist_state< CHR >::is_transposed	(	int	pos1,
		int	pos2
	)			[inline]

Definition at line 83 of file editdistance.cc.

References edist_state< CHR >::seq1, and edist_state< CHR >::seq2.

Referenced by edist_state< CHR >::edist_calc_f_kp().

template<class CHR>

void edist_state< CHR >::edist_calc_f_kp	(	int	k,
		int	p
	)			[inline]

Definition at line 93 of file editdistance.cc.

References edist_state< CHR >::get_f_kp(), edist_state< CHR >::is_transposed(), edist_state< CHR >::seq1, edist_state< CHR >::seq2, and edist_state< CHR >::set_f_kp().

Referenced by seqcmp_editdist().

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Member Data Documentation

template<class CHR>

edist_seq<CHR> edist_state< CHR >::seq1 [private]

Definition at line 50 of file editdistance.cc.

Referenced by edist_state< CHR >::edist_calc_f_kp(), and edist_state< CHR >::is_transposed().

template<class CHR>

edist_seq<CHR> edist_state< CHR >::seq2 [private]

Definition at line 51 of file editdistance.cc.

Referenced by edist_state< CHR >::edist_calc_f_kp(), and edist_state< CHR >::is_transposed().

template<class CHR>

int* edist_state< CHR >::fkp [private]

Definition at line 58 of file editdistance.cc.

Referenced by edist_state< CHR >::edist_state(), edist_state< CHR >::get_f_kp(), edist_state< CHR >::set_f_kp(), and edist_state< CHR >::~edist_state().

template<class CHR>

int edist_state< CHR >::fkp_cols [private]

Definition at line 59 of file editdistance.cc.

Referenced by edist_state< CHR >::calc_index(), and edist_state< CHR >::edist_state().

template<class CHR>

int edist_state< CHR >::maxdist [private]

Definition at line 63 of file editdistance.cc.

Referenced by edist_state< CHR >::calc_index(), and edist_state< CHR >::edist_state().

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The documentation for this class was generated from the following file:

• api/editdistance.cc

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